Domain-mediated interactions for protein subfamily identification

Within a protein family, proteins with the same domain often exhibit different cellular functions, despite the shared evolutionary history and molecular function of the domain. We hypothesized that domain-mediated interactions (DMIs) may categorize a protein family into subfamilies because the diversified functions of a single domain often depend on interacting partners of domains. Here we systematically identified DMI subfamilies, in which proteins share domains with DMI partners, as well as with various functional and physical interaction networks in individual species. In humans, DMI subfamily members are associated with similar diseases, including cancers, and are frequently co-associated with the same diseases. DMI information relates to the functional and evolutionary subdivisions of human kinases. In yeast, DMI subfamilies contain proteins with similar phenotypic outcomes from specific chemical treatments. Therefore, the systematic investigation here provides insights into the diverse functions of subfamilies derived from a protein family with a link-centric approach and suggests a useful resource for annotating the functions and phenotypic outcomes of proteins.11Ysciescopu

Slower Speed and Stronger Coupling: Adaptive Mechanisms of Self-Organized Chaos Synchronization

We show that two initially weakly coupled chaotic systems can achieve self-organized synchronization by adaptively reducing their speed and/or enhancing the coupling strength. Explicit adaptive algorithms for speed-reduction and coupling-enhancement are provided. We apply these algorithms to the self-organized synchronization of two coupled Lorenz systems. It is found that after a long-time self-organized process, the two coupled chaotic systems can achieve synchronization with almost minimum required coupling-speed ratio.Comment: 4 pages, 5 figure

Sampled-data sliding mode observer for robust fault reconstruction: A time-delay approach

A sliding mode observer in the presence of sampled output information and its application to robust fault reconstruction is studied. The observer is designed by using the delayed continuous-time representation of the sampled-data system, for which sufficient conditions are given in the form of linear matrix inequalities (LMIs) to guarantee the ultimate boundedness of the error dynamics. Though an ideal sliding motion cannot be achieved in the observer when the outputs are sampled, ultimately bounded solutions can be obtained provided the sampling frequency is fast enough. The bound on the solution is proportional to the sampling interval and the magnitude of the switching gain. The proposed observer design is applied to the problem of fault reconstruction under sampled outputs and system uncertainties. It is shown that actuator or sensor faults can be reconstructed reliably from the output error dynamics. An example of observer design for an inverted pendulum system is used to demonstrate the merit of the proposed methodology compared to existing sliding mode observer design approaches

10-Gb/s transmission over 20-km single fiber link using 1-GHz RSOA by discrete multitone with multiple access

We demonstrate a novel 10.5-Gbit/s transmission scheme over 20-km single fiber link by using a remotely fed 1-GHz reflective semiconductor optical amplifier (RSOA). Discrete multitone (DMT) modulation with adaptive bit-/power-loading is applied to overcome the bandwidth limitation of the RSOA. Transmission performance of the proposed scheme is analyzed in terms of various system parameters, such as the nonlinearity of the RSOA, optical signal-to-noise ratio of the optical seed carrier, the overhead size impact on dispersion, the number of DMT subcarriers, and the reflection noise from the single fiber link. We also report flexible-bandwidth-allocated multiple access operation based on the proposed scheme. The throughput for all cases is approximately 10 Gbit/s with BER <10-3

Two Graviton Production at e+e−e^+e^- and Hadron Hadron Colliders in the Randall-Sundrum Model

We compute the pair production cross section of two Kaluza Klein modes in the Randall-Sundrum model at $e^+e^-$ and hadron hadron colliders. These processes are interesting because they get dominant contribution from the graviton interaction at next to leading order. Hence they provide a nontrivial test of the low scale gravity models. All the Feynman rules at next to leading order are also presented. These rules may be useful for many phenomenological applications including the computation of higher order loop corrections.Comment: 24 pages, 11 figures, some typos correcte

Open Issues on the Synthesis of Evolved Stellar Populations at Ultraviolet Wavelengths

In this paper we briefly review three topics that have motivated our (and others') investigations in recent years within the context of evolutionary population synthesis techniques. These are: The origin of the FUV up-turn in elliptical galaxies, the age-metallicity degeneracy, and the study of the mid-UV rest-frame spectra of distant red galaxies. We summarize some of our results and present a very preliminary application of a UV grid of theoretical spectra in the analysis of integrated properties of aged stellar populations. At the end, we concisely suggest how these topics can be tackled once the World Space Observatory enters into operation in the midst of this decade.Comment: 8 pages, 4 figures, accepted for publication in Astrophysics & Space Science, UV Universe special issu

Diffuse neutron reflectivity and AFM study of interface morphology of an electro-deposited Ni/Cu film

We present a detailed study of the interface morphology of an electro-deposited (ED) Ni/Cu bilayer film by using off-specular (diffuse) neutron reflectivity technique and Atomic Force Microscopy (AFM). The Ni/Cu bilayer has been electro-deposited on seed layers of Ti/Cu. These two seed layers were deposited by magnetron sputtering. The depth profile of density in the sample has been obtained from specular neutron reflectivity data. AFM image of the air-film interface shows that the surface is covered by globular islands of different sizes. The AFM height distribution of the surface clearly shows two peaks [Fig. 3] and the relief structure (islands) on the surface in the film can be treated as a quasi-two-level random rough surface structure. We have demonstrated that the detailed morphology of air-film interfaces, the quasi-two level surface structure as well as morphology of the buried interfaces can be obtained from off-specular neutron reflectivity data. We have shown from AFM and off-specular neutron reflectivity data that the morphologies of electro-deposited surface is distinctly different from that of sputter-deposited interface in this sample. To the best of our knowledge this is the first attempt to microscopically quantify the differences in morphologies of metallic interfaces deposited by two different techniques viz. electro-deposition and sputtering

Response of an Excitatory-Inhibitory Neural Network to External Stimulation: An Application to Image Segmentation

Neural network models comprising elements which have exclusively excitatory or inhibitory synapses are capable of a wide range of dynamic behavior, including chaos. In this paper, a simple excitatory-inhibitory neural pair, which forms the building block of larger networks, is subjected to external stimulation. The response shows transition between various types of dynamics, depending upon the magnitude of the stimulus. Coupling such pairs over a local neighborhood in a two-dimensional plane, the resultant network can achieve a satisfactory segmentation of an image into ``object'' and ``background''. Results for synthetic and and ``real-life'' images are given.Comment: 8 pages, latex, 5 figure

Transport Measurements on Nano-engineered Two Dimensional Superconducting Wire Networks

Superconducting triangular Nb wire networks with high normal-state resistance are fabricated by using a negative tone hydrogen silsesquioxane (HSQ) resist. Robust magnetoresistance oscillations are observed up to high magnetic fields and maintained at low temperatures, due to the eective reduction of wire dimensions. Well-defined dips appear at integral and rational values (1/2, 1/3, 1/4) of the reduced flux f = Phi/Phi_0, which is the first observation in the triangular wire networks. These results are well consistent with theoretical calculations for the reduced critical temperature as a function of f.Comment: 4 pages, 3 figure

Graviton Resonances in E+ E- -> MU+ MU- at Linear Colliders with Beamstrahlung and ISR Effects

Electromagnetic radiation emitted by the colliding beams is expected to play an important role at the next generation of high energy e^+ e^- linear collider(s). Focusing on the simplest process e+e- -> mu+ mu-, we show that radiative effects like initial state radiation (ISR) and beamstrahlung can lead to greatly-enhanced signals for resonant graviton modes of the Randall-Sundrum model.Comment: 20 pages Latex, 7 eps figure